ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 2293.00 88.84 44.81 99.26 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 105.00 4.07 2.05 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 21.00 0.81 0.41 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 17.00 0.66 0.33 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 175.00 71.43 3.42 100.0 B4GALT1-203 nonsense mediated decay GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 102.00 14.63 1.99 100.0 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 90.00 12.91 1.76 78.95 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 38.00 5.45 0.74 100.0 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 149.00 84.66 2.91 100.0 MIR34BHG-202 lncRNA GM23248 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 393.00 81.54 7.68 86.75 THBS3-AS1-228 lncRNA GM23248 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1.00 50.00 0.02 100.0 MIR200CHG-202 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 11.00 3.75 0.21 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 56.00 19.11 1.09 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 26.00 8.87 0.51 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 11.00 3.75 0.21 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 43.00 72.88 0.84 100.0 MEG8-261 lncRNA GM23248 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 30.00 30.00 0.59 100.0 NR2F2-AS1-327 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 122.00 10.19 2.38 42.66 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 335.00 27.99 6.55 100.0 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 77.00 6.43 1.50 38.69 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 87.00 7.27 1.70 41.63 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 90.00 7.52 1.76 100.0 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 872.00 23.96 17.04 96.46 SNHG26-250 lncRNA GM23248 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 2077.00 57.08 40.59 95.8 SNHG26-250 lncRNA GM23248 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 6.00 1.63 0.12 100.0 LINC02422-207 lncRNA GM23248 (Cell line)