ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 44.00 0.65 0.86 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 114.00 1.68 2.23 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1464.89 21.58 28.63 65.16 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 1666.00 24.54 32.56 90.89 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 9.00 0.13 0.18 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 840.00 12.37 16.42 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 17.00 0.25 0.33 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3.00 0.04 0.06 75.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 22.00 0.06 0.43 100.0 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 71.00 0.20 1.39 51.08 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 33676.00 94.86 658.15 98.57 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 90.00 0.25 1.76 58.44 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 353.00 0.99 6.90 89.14 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 236.00 70.45 4.61 92.91 SNHG14-336 lncRNA GM23248 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 59.00 17.61 1.15 46.46 SNHG14-336 lncRNA GM23248 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 8.00 24.24 0.16 100.0 FMN2-209 protein coding CDS not defined GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.10 0.02 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 18.00 1.79 0.35 48.65 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 163.00 16.22 3.19 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 166.00 16.52 3.24 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 164.00 16.32 3.21 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 19.00 1.89 0.37 51.35 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 20.00 24.10 0.39 100.0 SNHG10-212 lncRNA GM23248 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 2246.42 75.74 43.90 85.06 SNHG19-202 lncRNA GM23248 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 408.62 13.78 7.99 20.74 SNHG19-202 lncRNA GM23248 (Cell line)