ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 20.00 64.52 0.39 100.0 MIR374A-201 miRNA GM23248 (Cell line)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 2813.00 82.86 54.98 100.0 MIR31-201 miRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 1.00 0.02 0.02 50.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 11.32 0.19 0.22 80.84 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 8.00 0.13 0.16 88.89 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 41.00 0.68 0.80 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 10.00 0.17 0.20 83.33 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 3.00 0.05 0.06 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 227.00 3.76 4.44 92.65 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 92.00 1.52 1.80 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 703.00 11.65 13.74 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 1.72 0.03 0.03 86.11 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 2.45 0.04 0.05 24.52 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 2.00 0.03 0.04 66.67 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 0.77 0.01 0.02 38.48 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 3.00 0.05 0.06 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 38.00 0.63 0.74 66.67 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 8.00 25.81 0.16 100.0 Y_RNA.14-201 misc RNA GM23248 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 32.00 8.49 0.63 100.0 RNU5E-1-201 snRNA GM23248 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 1.00 0.02 0.02 100.0 RNA5SP370-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 25.00 29.07 0.49 100.0 SNORA31-201 snoRNA GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 104.00 2.14 2.03 85.25 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 54.00 1.11 1.06 61.36 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1.00 0.02 0.02 100.0 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 320.00 5.93 6.25 79.21 RNU5A-1-201 snRNA GM23248 (Cell line)