ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387409.1 ENST00000387409.1_1_37_+ 1–37 165.00 6.60 3.22 78.57 MT-TY-201 Mt tRNA GM23248 (Cell line)
ENST00000387419.1 ENST00000387419.1_1_51_+ 1–51 12.00 25.53 0.23 100.0 MT-TD-201 Mt tRNA GM23248 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 4.00 0.08 0.08 100.0 MT-TK-201 Mt tRNA GM23248 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_52_+ 1–52 2060.00 41.03 40.26 100.0 MT-TK-201 Mt tRNA GM23248 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 1588.00 31.63 31.04 100.0 MT-TK-201 Mt tRNA GM23248 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 67.00 1.33 1.31 100.0 MT-TK-201 Mt tRNA GM23248 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 368.00 38.90 7.19 100.0 MT-TS2-201 Mt tRNA GM23248 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 2.00 0.21 0.04 100.0 MT-TS2-201 Mt tRNA GM23248 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 187.00 19.77 3.65 74.5 MT-TS2-201 Mt tRNA GM23248 (Cell line)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 75.00 19.23 1.47 100.0 MT-TL2-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 233.00 4.89 4.55 90.66 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 24.00 0.50 0.47 11.37 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 1533.00 32.17 29.96 69.81 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 241.00 5.06 4.71 100.0 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 1.00 0.02 0.02 100.0 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 114.00 2.39 2.23 100.0 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 235.00 4.93 4.59 76.3 MT-TE-201 Mt tRNA GM23248 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 110.00 6.65 2.15 100.0 MT-RNR1-201 Mt rRNA GM23248 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 2.00 0.12 0.04 100.0 MT-RNR1-201 Mt rRNA GM23248 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 15.00 65.22 0.29 100.0 MIR454-201 miRNA GM23248 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 6.00 40.00 0.12 100.0 MIR501-201 miRNA GM23248 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 127.00 92.70 2.48 100.0 MIR769-201 miRNA GM23248 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 63.00 63.64 1.23 100.0 KRTAP19-1-201 protein coding GM23248 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1.00 25.00 0.02 100.0 MIR708-201 miRNA GM23248 (Cell line)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 8.00 47.06 0.16 100.0 MIR543-201 miRNA GM23248 (Cell line)