ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 303.00 0.07 1.30 43.53 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 730.00 0.18 3.14 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 7390.00 1.81 31.79 83.31 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 59588.00 14.60 256.31 79.07 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 181050.00 44.35 778.77 91.99 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 117862.00 28.87 506.97 99.23 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 118.00 0.03 0.51 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 2292.00 0.56 9.86 57.97 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 154.00 0.04 0.66 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1603.00 78.54 6.90 86.04 MIR3142HG-201 lncRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 4030.00 7.06 17.33 100.0 MIR151A-201 miRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 46880.00 82.16 201.65 89.91 MIR151A-201 miRNA stomach (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 2184.00 99.77 9.39 100.0 DENND3-221 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1080.00 2.63 4.65 29.62 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 7386.00 18.01 31.77 67.12 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 290.00 0.71 1.25 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 1476.00 3.60 6.35 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 2566.00 6.26 11.04 70.38 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 2111.00 5.15 9.08 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 238.00 17.59 1.02 100.0 SCARNA9-201 lncRNA stomach (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 29333.00 95.88 126.17 100.0 TAF1D-215 retained intron stomach (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 948874.00 74.40 4081.48 76.04 ENST00000548801 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 727.00 17.97 3.13 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 495.00 12.24 2.13 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 286.00 0.40 1.23 100.0 SNHG14-220 retained intron stomach (Tissue)