ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 0.16 0.03 100.0 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 677.00 18.60 2.91 80.21 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 4.00 100.00 0.02 100.0 MRPL32-203 nonsense mediated decay stomach (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 34.00 82.93 0.15 100.0 ENST00000436739 lncRNA stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 3984.00 37.11 17.14 85.0 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2884.00 26.87 12.41 93.18 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 118.00 1.10 0.51 100.0 TMEM107-204 protein coding stomach (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1134.00 73.26 4.88 100.0 SNHG16-201 lncRNA stomach (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 37909.00 76.51 163.06 94.55 SNORD105B-201 snoRNA stomach (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 203.00 29.34 0.87 46.14 SNORD121B-201 snoRNA stomach (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1128.00 52.83 4.85 100.0 SNORD127-201 snoRNA stomach (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 21096.00 97.00 90.74 100.0 SNORD42B-201 snoRNA stomach (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 508.00 8.70 2.19 100.0 RNY4P25-201 misc RNA stomach (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 461.00 79.76 1.98 100.0 SNORD121A-201 snoRNA stomach (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1.00 0.02 0.00 0.27 SNORD126-201 snoRNA stomach (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5573.00 97.12 23.97 99.98 SNORD126-201 snoRNA stomach (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1021.00 48.83 4.39 100.0 SNHG12-201 retained intron stomach (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4029.00 96.94 17.33 100.0 SMC1A-204 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 336.00 14.15 1.45 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 960.00 40.42 4.13 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2222.00 80.10 9.56 100.0 RPS8-206 protein coding CDS not defined stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 665.00 9.70 2.86 100.0 RPL13-207 retained intron stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3418.00 49.83 14.70 100.0 RPL13-207 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2513.00 0.58 10.81 50.81 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 781.00 0.18 3.36 48.97 EIF4A2-219 retained intron stomach (Tissue)