ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 84246.11 25.59 855.18 32.13 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 154.00 0.05 1.56 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 276.00 0.08 2.80 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 220532.95 66.98 2238.63 73.76 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 1954.00 0.59 19.84 60.36 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 138.00 0.04 1.40 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2918.00 0.89 29.62 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 10461.00 3.18 106.19 94.75 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 3.00 0.00 0.03 75.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 132.00 0.04 1.34 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2559.00 0.78 25.98 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1.00 25.00 0.01 100.0 MEG8-251 lncRNA OCI-LY7 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 1.00 25.00 0.01 25.0 SNHG14-336 lncRNA OCI-LY7 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 3.00 75.00 0.03 100.0 SNHG14-336 lncRNA OCI-LY7 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 2.00 100.00 0.02 100.0 SNHG14-341 lncRNA OCI-LY7 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 51.00 1.95 0.52 100.0 NCL-211 retained intron OCI-LY7 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 3698.00 86.79 37.54 100.0 FMN2-209 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 7470.00 56.36 75.83 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 19.00 0.14 0.19 70.37 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 4.00 0.03 0.04 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 8.00 0.06 0.08 29.63 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 19.00 0.14 0.19 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 88.00 0.66 0.89 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 25.00 2.34 0.25 100.0 SNHG10-212 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 54081.33 86.99 548.98 92.36 SNHG19-202 lncRNA OCI-LY7 (Cell line)