ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 7247.00 2.81 6.07 100.0 SNHG32-227 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 167.00 0.06 0.14 100.0 SNHG32-227 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 149.00 0.06 0.12 100.0 SNHG32-227 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 570.00 70.28 0.48 100.0 B4GALT1-203 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1261.00 18.59 1.06 100.0 ENST00000722183 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1904.00 28.07 1.60 91.63 ENST00000722183 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 244.00 3.60 0.20 100.0 ENST00000722183 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 132.00 60.55 0.11 100.0 MIR34BHG-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 8948.00 78.94 7.50 84.09 THBS3-AS1-228 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 29298.00 76.23 24.54 100.0 MIR200CHG-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 3073.00 8.00 2.57 100.0 MIR200CHG-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 52743.00 83.20 44.19 100.0 SNHG16-266 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1347.00 2.12 1.13 100.0 SNHG16-266 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 738.00 1.16 0.62 100.0 SNHG16-266 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 286.00 0.45 0.24 100.0 SNHG16-266 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 32.00 64.00 0.03 100.0 MEG8-261 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 399.00 39.82 0.33 100.0 NR2F2-AS1-327 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 485.00 2.70 0.41 35.02 ENST00000747675 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 7886.00 43.89 6.61 100.0 ENST00000747675 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 399.00 2.22 0.33 45.14 ENST00000747675 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 501.00 2.79 0.42 50.81 ENST00000747675 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 2836.00 15.78 2.38 100.0 ENST00000747675 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 11239.00 14.26 9.42 97.24 SNHG26-250 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 61564.00 78.09 51.58 98.05 SNHG26-250 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 245.00 16.62 0.21 100.0 LINC02422-207 lncRNA hepatocyte (In vitro differentiated cells)