ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 125683.00 1.37 105.29 99.48 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 11161.00 0.12 9.35 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 2169890.00 23.64 1817.84 99.93 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 4412.00 0.05 3.70 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 918.00 0.01 0.77 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1967.00 0.02 1.65 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 5288.00 0.06 4.43 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 2112.00 0.02 1.77 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 1095.00 0.01 0.92 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 136139.00 1.48 114.05 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 1118.00 0.01 0.94 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 2005.00 0.02 1.68 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 258705.00 2.82 216.73 72.02 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 172.00 0.00 0.14 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1563079.00 17.03 1309.48 97.93 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 430.00 0.00 0.36 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 176.00 0.00 0.15 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3.00 0.00 0.00 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 263830.00 2.87 221.02 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1975.00 0.02 1.65 74.75 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 3251.09 0.04 2.72 48.26 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 897.00 0.01 0.75 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1589.00 0.02 1.33 54.49 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1296.00 0.01 1.09 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1724.00 0.02 1.44 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)