ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 33682.00 7.00 28.22 56.52 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 60083.00 12.49 50.33 46.52 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1956.00 0.41 1.64 100.0 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 257277.00 53.47 215.54 94.63 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 13.00 65.00 0.01 100.0 ENST00000582320 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 3.00 15.00 0.00 100.0 ENST00000582320 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 38216.00 22.79 32.02 100.0 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 71547.08 42.66 59.94 60.33 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 51004.05 30.41 42.73 41.57 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 100.00 0.00 0.08 100.0 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 3349811.00 99.51 2806.32 99.9 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 327.00 0.01 0.27 100.0 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 557.00 50.50 0.47 100.0 MIR151B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 130.00 0.64 0.11 100.0 SNORD3A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 59183.00 92.96 49.58 100.0 SNORD92-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 12028.00 58.84 10.08 100.0 NSRP1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 6115.00 29.91 5.12 89.47 NSRP1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 4113.00 16.44 3.45 100.0 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2738.00 10.95 2.29 93.0 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 6056.00 24.21 5.07 81.1 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 6633.00 26.52 5.56 94.74 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1529.00 6.11 1.28 54.65 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 7011.00 50.72 5.87 100.0 MIR122HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 304.00 68.16 0.25 100.0 ODAD3-204 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 5429.00 4.60 4.55 100.0 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)