ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 12.00 0.17 0.05 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 110.00 1.52 0.43 37.04 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 236.00 3.26 0.93 76.87 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 171.00 2.36 0.68 71.85 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3963.48 9.24 15.67 48.18 5S_rRNA.20-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 601.00 4.39 2.38 100.0 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 8213.00 59.98 32.47 80.45 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 3317.00 49.59 13.11 100.0 DNM3OS-205 lncRNA esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 335.00 0.06 1.32 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1596.00 0.29 6.31 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 178.00 0.03 0.70 60.14 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 5903.00 1.09 23.33 95.18 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 41.00 0.01 0.16 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 189.00 0.03 0.75 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 192.00 0.04 0.76 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 226749.00 41.68 896.33 99.81 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 495.00 0.09 1.96 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 103531.00 19.03 409.25 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 4467.00 0.82 17.66 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 646.00 0.12 2.55 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3165.00 0.58 12.51 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 23.00 0.00 0.09 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 2557.00 0.47 10.11 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 351.00 0.06 1.39 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 10975.00 2.02 43.38 85.03 GAS5-230 retained intron esophagus squamous epithelium (Tissue)