ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 329.00 12.82 1.30 55.11 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2101.00 81.88 8.31 96.42 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 12619.00 94.83 49.88 98.49 SNORD124-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 446.00 19.89 1.76 100.0 SNHG12-201 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1281.00 24.47 5.06 90.08 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1040.00 19.87 4.11 100.0 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2954.00 96.60 11.68 100.0 SMC1A-204 retained intron esophagus squamous epithelium (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 123481.00 94.72 488.12 98.89 RABGGTB-208 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1745.00 44.08 6.90 81.85 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 176.00 4.45 0.70 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 621.00 15.69 2.45 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2913.00 84.73 11.51 100.0 RPS8-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 734.00 0.21 2.90 100.0 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 352517.00 98.92 1393.49 99.75 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 106806.00 19.29 422.20 85.72 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 345.00 0.06 1.36 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 215337.00 38.90 851.22 98.17 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 701.00 0.13 2.77 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 11074.00 2.00 43.78 46.68 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 23.00 0.00 0.09 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 37.00 0.01 0.15 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 97617.00 17.63 385.88 80.9 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 526.00 0.10 2.08 41.09 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1855.00 0.34 7.33 47.41 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1097.00 0.20 4.34 57.28 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)