ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 5.00 3.21 0.03 100.0 HCN2-201 protein coding testis (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 1.00 6.67 0.01 100.0 ATP5MC3-201 protein coding testis (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 185.00 86.45 1.16 100.0 CDC25A-201 protein coding testis (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 221.00 81.55 1.38 100.0 RUNX3-201 protein coding testis (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 22.00 24.18 0.14 100.0 BLOC1S4-201 protein coding testis (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 18.00 14.63 0.11 100.0 ATAD5-201 protein coding testis (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 31.00 10.58 0.19 100.0 SLITRK5-201 protein coding testis (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 2.00 5.56 0.01 100.0 HASPIN-201 protein coding testis (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 184.00 96.34 1.15 100.0 ATG101-201 protein coding testis (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 7.00 35.00 0.04 100.0 PRICKLE1-201 protein coding testis (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 5.00 83.33 0.03 100.0 MIR133A2-201 miRNA testis (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 44.00 20.85 0.28 100.0 PBLD-204 protein coding testis (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 97555.00 88.58 611.27 97.73 MIRLET7BHG-201 lncRNA testis (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 6630.00 6.02 41.54 83.31 MIRLET7BHG-201 lncRNA testis (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 2.00 2.00 0.01 100.0 MIR375-201 miRNA testis (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 96.00 96.00 0.60 98.97 MIR375-201 miRNA testis (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 964.00 58.53 6.04 100.0 MIR30E-201 miRNA testis (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 568.00 34.49 3.56 100.0 MIR30E-201 miRNA testis (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 51.00 40.80 0.32 100.0 MIR29A-201 miRNA testis (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 18.00 75.00 0.11 100.0 MIR345-201 miRNA testis (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 1274.00 97.92 7.98 100.0 MIR16-2-201 miRNA testis (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 137.00 96.48 0.86 100.0 MIR340-201 miRNA testis (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 176.00 69.29 1.10 100.0 MIR107-201 miRNA testis (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 83.00 93.26 0.52 93.26 MIR381-201 miRNA testis (Tissue)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 1070.00 84.45 6.70 90.52 MIR103A2-201 miRNA testis (Tissue)