ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 71.00 51.45 0.58 100.0 SNHG21-206 retained intron A375 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 43.00 63.24 0.35 100.0 SNORD11B-201 snoRNA A375 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 4469.00 88.06 36.48 100.0 SNORD91B-201 snoRNA A375 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 7096.00 79.89 57.92 87.41 SNORD91A-201 snoRNA A375 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 3.00 37.50 0.02 100.0 MIR486-1-201 miRNA A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 5623.00 15.07 45.89 28.31 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 394.00 1.06 3.22 100.0 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 162.00 0.43 1.32 100.0 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 12703.00 34.05 103.68 97.75 NOP56-219 retained intron A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 5821.00 15.90 47.51 57.43 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 162.53 0.44 1.33 56.83 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 412.00 1.13 3.36 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 232.00 0.63 1.89 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 429.00 1.17 3.50 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 6242.00 17.05 50.95 51.75 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 126.26 0.34 1.03 44.15 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 21.00 91.30 0.17 100.0 MIR7974-201 miRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 572.00 0.15 4.67 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1059.61 0.29 8.65 32.04 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 310500.00 83.63 2534.26 99.62 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4.00 0.00 0.03 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 25408.00 6.84 207.38 87.91 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 1564.00 0.42 12.77 46.48 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 6325.00 1.70 51.62 83.77 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2271.67 0.61 18.54 68.69 U2.3-201 snRNA A375 (Cell line)