ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3560.00 37.73 29.06 70.19 SNHG16-201 lncRNA A375 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 4544.00 48.16 37.09 100.0 SNHG16-201 lncRNA A375 (Cell line)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 1.00 50.00 0.01 100.0 SNHG14-207 lncRNA A375 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 159233.00 97.23 1299.64 98.49 SNORD105B-201 snoRNA A375 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 331.00 76.62 2.70 91.44 SNORD121B-201 snoRNA A375 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 21462.00 94.78 175.17 99.76 SNORD127-201 snoRNA A375 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10405.00 88.28 84.92 100.0 SNORD42B-201 snoRNA A375 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 43.00 17.00 0.35 100.0 RNY4P25-201 misc RNA A375 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 370.00 62.61 3.02 100.0 SNORD121A-201 snoRNA A375 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2673.00 42.80 21.82 76.77 SNORD126-201 snoRNA A375 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3426.00 54.86 27.96 84.66 SNORD126-201 snoRNA A375 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 7348.00 90.10 59.97 91.82 SNORD124-201 snoRNA A375 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 18.00 2.20 0.15 100.0 SNHG12-201 retained intron A375 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 227.00 11.29 1.85 100.0 RPL3-212 retained intron A375 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 854.00 42.49 6.97 98.27 RPL3-212 retained intron A375 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 366.00 95.06 2.99 100.0 SMC1A-204 retained intron A375 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 103618.00 96.07 845.72 99.13 RABGGTB-208 protein coding CDS not defined A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 125.00 39.06 1.02 77.16 DDX39B-219 retained intron A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 21.00 6.56 0.17 100.0 DDX39B-219 retained intron A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 8.00 2.50 0.07 100.0 DDX39B-219 retained intron A375 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2092.00 89.21 17.07 100.0 RPS8-206 protein coding CDS not defined A375 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 214634.00 99.00 1751.82 99.92 RPL13-207 retained intron A375 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 237.00 0.11 1.93 100.0 RPL13-207 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 257.00 0.14 2.10 54.68 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 74.00 0.04 0.60 31.09 EIF4A2-219 retained intron A375 (Cell line)