ENCFF476SLG
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | A375 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR376XXO |
| Description: | Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387347.2 | ENST00000387347.2_1500_1559_+ | 1500–1559 | 68.00 | 1.71 | 0.56 | 100.0 | MT-RNR2-201 | Mt rRNA | A375 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1297_1329_+ | 1297–1329 | 36.00 | 0.91 | 0.29 | 100.0 | MT-RNR2-201 | Mt rRNA | A375 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_74_96_+ | 74–96 | 1.00 | 0.03 | 0.01 | 100.0 | MT-RNR2-201 | Mt rRNA | A375 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_51_+ | 1–51 | 440.00 | 6.99 | 3.59 | 89.8 | MT-TI-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_58_+ | 1–58 | 1641.00 | 26.05 | 13.39 | 100.0 | MT-TI-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_30_+ | 1–30 | 322.81 | 13.96 | 2.63 | 64.43 | MT-TQ-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_32_+ | 1–32 | 455.31 | 19.69 | 3.72 | 55.8 | MT-TQ-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_55_+ | 1–55 | 36.00 | 1.56 | 0.29 | 100.0 | MT-TQ-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_36_+ | 1–36 | 518.00 | 22.40 | 4.23 | 76.51 | MT-TQ-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_51_+ | 1–51 | 210.00 | 18.99 | 1.71 | 100.0 | MT-TM-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 230.00 | 20.80 | 1.88 | 56.51 | MT-TM-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 19.00 | 11.59 | 0.16 | 100.0 | MT-TC-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 22735.00 | 80.86 | 185.56 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 65.00 | 0.23 | 0.53 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 1732.00 | 6.16 | 14.14 | 69.53 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 71.00 | 0.25 | 0.58 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 1729.00 | 6.15 | 14.11 | 85.3 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 1.00 | 0.00 | 0.01 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 2.00 | 6.90 | 0.02 | 100.0 | MT-TD-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 517.00 | 23.24 | 4.22 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 24.00 | 1.08 | 0.20 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 2.00 | 0.09 | 0.02 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 818.00 | 36.76 | 6.68 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 37.00 | 8.01 | 0.30 | 100.0 | MT-TS2-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 39.00 | 8.44 | 0.32 | 95.12 | MT-TS2-201 | Mt tRNA | A375 (Cell line) |