ENCFF450POH

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 36.00 6.41 0.28 83.72 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 16.00 2.85 0.12 72.73 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 2055.00 81.48 15.89 100.0 ODAD3-204 nonsense mediated decay GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1863.00 6.63 14.41 100.0 VMP1-217 retained intron GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 735.00 2.61 5.68 100.0 VMP1-217 retained intron GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 21658.00 77.04 167.47 89.09 VMP1-217 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1496.00 0.17 11.57 100.0 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 132743.85 15.31 1026.43 18.44 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 676366.56 78.01 5229.93 79.49 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 6374.00 0.74 49.29 92.48 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 583.00 0.07 4.51 100.0 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 130862.00 89.12 1011.88 100.0 ENST00000597420 lncRNA GM23338 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 6.00 2.90 0.05 100.0 RPS11-206 retained intron GM23338 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 14.00 6.76 0.11 100.0 RPS11-206 retained intron GM23338 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 20.00 50.00 0.15 55.56 CARMN-209 lncRNA GM23338 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 14401.00 66.94 111.35 100.0 ENST00000602478 lncRNA GM23338 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 9.00 18.00 0.07 100.0 PPFIA1P1-201 processed pseudogene GM23338 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 4.00 100.00 0.03 100.0 MIR98-201 miRNA GM23338 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 47.00 74.60 0.36 100.0 MIR15A-201 miRNA GM23338 (Cell line)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1.00 100.00 0.01 100.0 MIR376C-201 miRNA GM23338 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 262.00 63.44 2.03 100.0 SNHG21-206 retained intron GM23338 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 29.00 40.85 0.22 100.0 SNORD11B-201 snoRNA GM23338 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 166.00 41.71 1.28 100.0 SNORD91B-201 snoRNA GM23338 (Cell line)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 36.00 25.71 0.28 100.0 MIR219A2HG-201 lncRNA GM23338 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 755.00 45.32 5.84 95.81 SNORD91A-201 snoRNA GM23338 (Cell line)