ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 4724.00 18.83 23.49 89.5 SNORD82-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1061.00 4.23 5.28 100.0 SNORD82-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 6252.91 24.93 31.09 58.16 SNORD82-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 53791.00 94.16 267.46 95.71 MIR146B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 219.00 66.57 1.09 100.0 SNHG20-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 38.00 6.38 0.19 100.0 ATP5MK-205 protein coding esophagus squamous epithelium (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 117.00 19.63 0.58 100.0 ATP5MK-205 protein coding esophagus squamous epithelium (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 16.00 6.11 0.08 100.0 LINC01556-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 462.00 36.72 2.30 100.0 ATAD3A-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 9.00 6.08 0.04 33.33 TMC5-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 975.00 93.84 4.85 100.0 ZMYM2-203 protein coding esophagus squamous epithelium (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 205.00 2.31 1.02 100.0 RNVU1-7-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 6273.00 80.64 31.19 100.0 SNORD24-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 396.00 71.22 1.97 100.0 Y_RNA.389-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 321.00 0.16 1.60 100.0 SNORD101-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 7128.00 3.51 35.44 83.03 SNORD101-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 191068.00 94.17 950.03 99.55 SNORD101-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 131.00 0.06 0.65 100.0 SNORD101-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 73776.00 97.59 366.83 100.0 SNORD37-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 172116.00 92.62 855.80 99.07 SNORD59A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 26.00 13.47 0.13 100.0 SNORA7B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 462.00 37.90 2.30 100.0 SNORD14D-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 40.00 9.07 0.20 100.0 Y_RNA.555-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 4986.00 89.07 24.79 91.49 MIR25-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 4486.00 90.79 22.31 95.35 MIR99B-201 miRNA esophagus squamous epithelium (Tissue)