ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 909.00 1.50 4.52 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 20.00 0.03 0.10 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 13.00 0.02 0.06 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 2206.00 79.87 10.97 100.0 B4GALT1-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 124.00 1.27 0.62 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2047.00 21.05 10.18 80.88 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 394.00 4.05 1.96 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 104.00 65.82 0.52 100.0 MIR34BHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4183.00 74.72 20.80 80.01 THBS3-AS1-228 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 4337.00 71.50 21.56 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 627.00 10.34 3.12 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 42166.00 86.41 209.66 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1248.00 2.56 6.21 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 335.00 0.69 1.67 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 289.00 0.59 1.44 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 2.00 50.00 0.01 100.0 MEG8-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 147.00 10.95 0.73 100.0 NR2F2-AS1-327 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 327.00 1.38 1.63 31.2 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 721.00 3.04 3.58 40.14 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 12888.00 54.27 64.08 100.0 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 748.00 3.15 3.72 50.92 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 2901.00 12.22 14.42 100.0 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 14942.00 48.41 74.29 97.08 SNHG26-250 lncRNA esophagus squamous epithelium (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 4448.00 14.41 22.12 60.36 SNHG26-250 lncRNA esophagus squamous epithelium (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 502.00 22.63 2.50 100.0 LINC02422-207 lncRNA esophagus squamous epithelium (Tissue)