ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3008.00 95.64 14.96 100.0 SMC1A-204 retained intron esophagus squamous epithelium (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 125494.00 94.10 623.98 98.81 RABGGTB-208 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 329.00 6.99 1.64 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 933.00 19.82 4.64 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1803.00 38.30 8.96 84.29 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3345.00 83.37 16.63 100.0 RPS8-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 32067.00 95.31 159.44 99.82 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 928.00 2.76 4.61 100.0 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 465588.00 67.49 2315.00 98.12 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1796.00 0.26 8.93 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 7313.00 1.06 36.36 73.26 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 621.00 0.09 3.09 47.37 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4577.00 0.66 22.76 89.64 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 148804.00 21.57 739.89 82.3 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 494.00 0.07 2.46 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1050.00 0.15 5.22 49.98 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1377.00 0.20 6.85 44.23 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2043.00 0.30 10.16 25.85 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 6.00 0.00 0.03 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 63.00 0.01 0.31 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 24739.00 3.59 123.01 79.34 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1245.00 0.18 6.19 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 526.00 0.08 2.62 34.9 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 31029.00 98.26 154.28 100.0 RPS8-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 272.00 20.39 1.35 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)