ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1245.00 1.06 6.14 69.13 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 112445.00 95.52 554.73 98.8 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 642.00 0.55 3.17 34.42 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 599.00 0.51 2.96 91.31 MEG8-251 lncRNA spleen (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 358.00 29.15 1.77 100.0 FMN2-209 protein coding CDS not defined spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 97.00 2.40 0.48 82.91 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 6.00 0.15 0.03 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 20.00 0.49 0.10 17.09 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 518.00 12.81 2.56 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 518.00 12.81 2.56 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 537.00 13.28 2.65 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 25.00 0.00 100.0 MIR124-1HG-216 lncRNA spleen (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 698.00 29.07 3.44 100.0 SNHG10-212 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 635.00 13.52 3.13 57.05 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 22.00 0.47 0.11 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2682.00 57.11 13.23 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 889.00 60.56 4.39 100.0 RPSA-216 retained intron spleen (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1350.00 54.63 6.66 96.64 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 590.00 23.88 2.91 89.67 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 327.00 97.61 1.61 100.0 HPS4-237 retained intron spleen (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 201.00 91.78 0.99 100.0 MEG8-253 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 12.00 2.94 0.06 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 154.00 37.75 0.76 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 7.00 1.72 0.03 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 2606.00 11.62 12.86 100.0 DNAJC5-203 nonsense mediated decay spleen (Tissue)