ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 621.00 47.70 2.81 100.0 HCN2-201 protein coding stomach (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 12.00 4.58 0.05 100.0 ATP5MC3-201 protein coding stomach (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 52.00 28.42 0.24 100.0 CDC25A-201 protein coding stomach (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 2184.00 77.83 9.88 100.0 RUNX3-201 protein coding stomach (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 6746.00 86.00 30.52 100.0 BLOC1S4-201 protein coding stomach (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 449.00 29.01 2.03 100.0 ATAD5-201 protein coding stomach (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 56.00 2.18 0.25 100.0 SLITRK5-201 protein coding stomach (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 11.00 45.83 0.05 100.0 HASPIN-201 protein coding stomach (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 1344.00 98.75 6.08 100.0 ATG101-201 protein coding stomach (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 67.00 57.26 0.30 100.0 PRICKLE1-201 protein coding stomach (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1466.00 91.57 6.63 94.89 MIR133A2-201 miRNA stomach (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 2.00 10.53 0.01 100.0 PBLD-204 protein coding stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 174791.00 82.64 790.73 95.45 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 17858.00 8.44 80.79 78.84 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 9826.00 4.96 44.45 61.47 MIR375-201 miRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 185577.00 93.71 839.53 97.58 MIR375-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 7384.00 51.72 33.40 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 5880.00 41.19 26.60 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 478.00 41.89 2.16 100.0 MIR29A-201 miRNA stomach (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 123.00 75.93 0.56 100.0 MIR345-201 miRNA stomach (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 9595.00 98.53 43.41 100.0 MIR16-2-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 2807.00 95.57 12.70 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 3.00 0.10 0.01 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1079.00 45.17 4.88 100.0 MIR107-201 miRNA stomach (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 252.00 83.44 1.14 87.8 MIR381-201 miRNA stomach (Tissue)