ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 5733.00 1.29 17.07 90.96 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 701.00 0.16 2.09 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 297.00 0.07 0.88 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 1129.00 0.25 3.36 89.25 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 83309.00 18.70 248.06 47.88 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 14.00 0.00 0.04 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 69.00 0.02 0.21 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 102.00 47.00 0.30 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 725.00 0.48 2.16 99.72 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 79.00 6.91 0.24 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 174.00 15.22 0.52 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 63.00 4.34 0.19 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 105.00 0.81 0.31 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 68.00 0.04 0.20 15.7 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 59.00 0.04 0.18 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 1333.00 22.11 3.97 70.34 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 862.00 14.30 2.57 39.27 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 446.00 6.08 1.33 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 5695.00 1.28 16.96 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 267304.00 60.09 795.91 89.28 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 324.00 19.16 0.96 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 22.00 1.17 0.07 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 95.00 0.22 0.28 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 445.00 2.76 1.33 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 51.00 0.32 0.15 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)