ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1327.00 16.50 3.95 72.24 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1979.00 24.60 5.89 95.79 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 553.00 6.87 1.65 72.57 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 4753.00 70.21 14.15 100.0 ODAD3-204 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 175.00 2.40 0.52 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 340.00 4.66 1.01 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 4696.00 64.37 13.98 76.35 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 205.00 0.05 0.61 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 283769.40 65.04 844.94 70.65 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 135259.65 31.00 402.74 31.81 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 6574.00 1.51 19.57 87.56 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 44.00 0.01 0.13 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 5.00 0.00 0.01 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 1151.00 34.02 3.43 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1847.00 54.60 5.50 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 2337358.00 84.94 6959.62 85.98 CARMN-209 lncRNA gastroesophageal sphincter (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 661.00 39.23 1.97 100.0 ENST00000602478 lncRNA gastroesophageal sphincter (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 149.00 53.41 0.44 100.0 PPFIA1P1-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1264.00 30.90 3.76 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2021.00 49.40 6.02 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 818.00 45.24 2.44 100.0 SNORD115-40-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1819.00 95.84 5.42 100.0 MIR98-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 4711.00 92.83 14.03 100.0 SNORD113-5-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 71.00 80.68 0.21 100.0 MIR15A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 204.00 47.33 0.61 100.0 SNHG21-206 retained intron gastroesophageal sphincter (Tissue)