ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 730.00 1.36 2.17 100.0 RNY4P25-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 388.00 75.34 1.16 100.0 SNORD121A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 14454.00 85.96 43.04 97.0 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1842.00 10.95 5.48 58.22 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 35569.00 96.78 105.91 98.32 SNORD124-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 476.00 20.20 1.42 100.0 SNHG12-201 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3121.00 28.40 9.29 100.0 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1887.00 17.17 5.62 57.43 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4758.00 97.24 14.17 100.0 SMC1A-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 63933.00 92.20 190.36 98.25 RABGGTB-208 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1490.00 8.80 4.44 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 9587.00 56.64 28.55 80.23 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 826.00 4.88 2.46 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3292.00 82.42 9.80 100.0 RPS8-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 1558314.00 98.48 4639.97 99.65 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 8231.00 0.52 24.51 100.0 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 233898.00 71.30 696.44 99.05 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2196.00 0.67 6.54 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 559.00 0.17 1.66 51.1 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 50.00 0.02 0.15 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 20.00 0.01 0.06 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 3731.00 1.14 11.11 51.58 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 483.00 0.15 1.44 51.44 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1513.00 0.46 4.51 51.71 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 118.00 0.04 0.35 28.43 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)