ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 47626.00 79.87 141.81 89.0 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 901.00 1.51 2.68 100.0 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 359.00 82.91 1.07 100.0 NDE1-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 55.00 29.41 0.16 100.0 MIR887-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 7.00 100.00 0.02 100.0 MIR889-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 5436.00 78.59 16.19 100.0 SNORD111-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 704.00 49.40 2.10 74.26 SNORD88A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 6.00 85.71 0.02 100.0 MIR548K-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 565.00 68.48 1.68 100.0 MIR320B2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 27.00 77.14 0.08 100.0 MIR1271-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 554.00 0.53 1.65 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 3117.00 3.00 9.28 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 93427.00 89.91 278.18 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 3006.00 2.89 8.95 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2371.00 54.34 7.06 100.0 SNORD111B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 465.00 9.72 1.38 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 308.00 6.44 0.92 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 446.00 0.73 1.33 100.0 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 59365.00 97.34 176.76 99.11 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2702.00 6.81 8.05 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 542.00 1.37 1.61 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 33742.00 85.10 100.47 96.15 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 62.00 10.62 0.18 100.0 Y_RNA.609-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 36.00 26.47 0.11 100.0 Y_RNA.612-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 641538.00 98.25 1910.22 99.78 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)