ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 453.00 26.73 1.35 73.78 MT-TM-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 541.00 40.07 1.61 100.0 MT-TC-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_65_+ 1–65 21381.00 53.02 63.66 100.0 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_50_+ 1–50 10.00 0.02 0.03 100.0 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_28_+ 1–28 550.00 1.36 1.64 100.0 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_32_+ 1–32 10355.00 25.68 30.83 87.23 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_56_+ 1–56 89.00 0.22 0.27 100.0 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387409.1 ENST00000387409.1_1_37_+ 1–37 3754.00 9.31 11.18 70.31 MT-TY-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387419.1 ENST00000387419.1_1_51_+ 1–51 63.00 41.72 0.19 100.0 MT-TD-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 42.00 0.34 0.13 100.0 MT-TK-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387421.1 ENST00000387421.1_1_52_+ 1–52 6843.00 54.63 20.38 100.0 MT-TK-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 2796.00 22.32 8.33 100.0 MT-TK-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 117.00 0.93 0.35 100.0 MT-TK-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 72.00 3.12 0.21 100.0 MT-TS2-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 148.00 6.41 0.44 100.0 MT-TS2-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 286.00 12.38 0.85 95.65 MT-TS2-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 131.00 12.20 0.39 100.0 MT-TL2-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 11.00 0.01 0.03 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 189092.00 87.10 563.03 92.09 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 225.00 0.10 0.67 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 64.00 0.03 0.19 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 600.00 0.28 1.79 83.8 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 84.00 0.04 0.25 73.68 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 30.00 0.01 0.09 31.91 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 3425.00 42.18 10.20 100.0 MT-RNR1-201 Mt rRNA gastroesophageal sphincter (Tissue)