ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 22.00 0.01 0.14 100.0 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 262535.00 79.82 1685.40 82.8 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 4719.00 26.47 30.29 100.0 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 223.61 1.25 1.44 72.6 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 217.08 1.22 1.39 56.83 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 4118.00 23.10 26.44 100.0 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 7498.00 86.38 48.14 100.0 ENST00000597420 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1.00 0.49 0.01 100.0 RPS11-206 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 17732.00 72.47 113.83 73.56 CARMN-209 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 34.00 33.66 0.22 100.0 PPFIA1P1-201 processed pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1.00 6.25 0.01 100.0 SNORD114-21-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 12.00 75.00 0.08 100.0 SNORD114-21-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 53.00 61.63 0.34 100.0 MIR98-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2150.00 93.52 13.80 100.0 MIR15A-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2.00 100.00 0.01 100.0 MIR376C-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 2322.00 61.23 14.91 100.0 SNHG21-206 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 6.00 1.23 0.04 100.0 SNORD91B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 87.00 44.16 0.56 100.0 MIR219A2HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 4.00 0.33 0.03 80.0 SNORD91A-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 1718.00 47.96 11.03 97.78 MIR486-1-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 590.00 5.07 3.79 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 7414.00 63.68 47.60 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 28.00 0.24 0.18 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 14.00 0.02 0.09 63.64 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 8.00 0.01 0.05 44.44 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)