ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 158.00 25.57 0.65 100.0 HCN2-201 protein coding vagina (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 5.00 23.81 0.02 100.0 SLC49A4-201 protein coding vagina (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 48.00 28.07 0.20 100.0 ATP5MC3-201 protein coding vagina (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 216.00 84.38 0.89 100.0 CDC25A-201 protein coding vagina (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 9159.00 94.66 37.88 100.0 RUNX3-201 protein coding vagina (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 203.00 27.21 0.84 100.0 BLOC1S4-201 protein coding vagina (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 587.00 50.13 2.43 100.0 ATAD5-201 protein coding vagina (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 18.00 3.30 0.07 100.0 SLITRK5-201 protein coding vagina (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 4.00 40.00 0.02 100.0 HASPIN-201 protein coding vagina (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 392.00 97.76 1.62 100.0 ATG101-201 protein coding vagina (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 19.00 51.35 0.08 100.0 PRICKLE1-201 protein coding vagina (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 676.00 94.28 2.80 97.27 MIR133A2-201 miRNA vagina (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 6.00 60.00 0.02 100.0 PBLD-204 protein coding vagina (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 148802.00 87.17 615.35 96.78 MIRLET7BHG-201 lncRNA vagina (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 10913.00 6.39 45.13 81.69 MIRLET7BHG-201 lncRNA vagina (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 43.00 1.99 0.18 91.49 MIR375-201 miRNA vagina (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 2095.00 97.08 8.66 99.29 MIR375-201 miRNA vagina (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1593.00 54.20 6.59 100.0 MIR30E-201 miRNA vagina (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1149.00 39.09 4.75 100.0 MIR30E-201 miRNA vagina (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 383.00 54.25 1.58 100.0 MIR29A-201 miRNA vagina (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 41.00 95.35 0.17 100.0 MIR345-201 miRNA vagina (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 3443.00 98.79 14.24 100.0 MIR16-2-201 miRNA vagina (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 3.00 0.51 0.01 100.0 MIR340-201 miRNA vagina (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 564.00 95.59 2.33 100.0 MIR340-201 miRNA vagina (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 334.00 55.67 1.38 100.0 MIR107-201 miRNA vagina (Tissue)