ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 47.00 0.55 0.19 100.0 RNU5A-1-201 snRNA vagina (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 269.01 3.14 1.11 39.74 RNU5A-1-201 snRNA vagina (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 887.00 10.34 3.67 73.92 RNU5A-1-201 snRNA vagina (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 773.00 9.01 3.20 58.96 RNU5A-1-201 snRNA vagina (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 947.00 11.04 3.92 59.52 RNU5A-1-201 snRNA vagina (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 10470.00 94.01 43.30 100.0 SNORD114-14-201 snoRNA vagina (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1725.00 7.25 7.13 100.0 SNORD104-201 snoRNA vagina (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 165.00 0.69 0.68 100.0 SNORD104-201 snoRNA vagina (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 15471.00 75.30 63.98 87.55 RNA5SP358-201 rRNA pseudogene vagina (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 32.00 2.56 0.13 38.55 RNA5SP145-201 rRNA pseudogene vagina (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 1.00 33.33 0.00 100.0 Y_RNA.105-201 misc RNA vagina (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 27.00 10.00 0.11 100.0 RNY4P9-201 misc RNA vagina (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 329.00 10.39 1.36 100.0 RNU5B-1-201 snRNA vagina (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 29.00 0.92 0.12 100.0 RNU5B-1-201 snRNA vagina (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1151.00 36.33 4.76 100.0 RNU5B-1-201 snRNA vagina (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 162.00 20.61 0.67 98.78 RNY4P27-201 misc RNA vagina (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 2.00 0.25 0.01 50.0 RNY4P27-201 misc RNA vagina (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 453.00 19.04 1.87 100.0 Y_RNA.136-201 misc RNA vagina (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 10444.00 93.88 43.19 98.82 SNORD114-25-201 snoRNA vagina (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 2268.00 91.90 9.38 100.0 SNORD113-7-201 snoRNA vagina (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 149.00 29.98 0.62 100.0 Y_RNA.181-201 misc RNA vagina (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 494.00 22.45 2.04 100.0 RNY1-201 misc RNA vagina (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 489.32 22.24 2.02 81.42 RNY1-201 misc RNA vagina (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 74.48 3.39 0.31 16.41 RNY1-201 misc RNA vagina (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 177.00 8.05 0.73 100.0 RNY1-201 misc RNA vagina (Tissue)