ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 761.79 1.74 3.15 37.11 SNHG25-206 lncRNA vagina (Tissue)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 1235.61 2.83 5.11 47.23 SNHG25-206 lncRNA vagina (Tissue)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 1409.21 3.22 5.83 38.48 SNHG25-206 lncRNA vagina (Tissue)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 9256.00 21.17 38.28 84.29 SNHG25-206 lncRNA vagina (Tissue)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 360.00 0.82 1.49 100.0 SNHG25-206 lncRNA vagina (Tissue)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 495.00 78.95 2.05 80.75 MIR155HG-205 lncRNA vagina (Tissue)
ENST00000784740.1 ENST00000784740.1_245_265_+ 245–265 19.00 76.00 0.08 100.0 ENST00000784740 lncRNA vagina (Tissue)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 92.00 10.30 0.38 78.63 ENST00000786284 lncRNA vagina (Tissue)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 299.00 33.48 1.24 100.0 ENST00000786284 lncRNA vagina (Tissue)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 25.00 2.80 0.10 39.68 ENST00000786284 lncRNA vagina (Tissue)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 1636.46 17.92 6.77 56.94 ENST00000797550 lncRNA vagina (Tissue)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 1521.28 16.66 6.29 52.93 ENST00000797550 lncRNA vagina (Tissue)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 4089.00 44.78 16.91 74.64 ENST00000797550 lncRNA vagina (Tissue)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 36910.00 85.75 152.64 91.33 MIR181A1HG-212 lncRNA vagina (Tissue)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 75.00 0.17 0.31 100.0 MIR181A1HG-212 lncRNA vagina (Tissue)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 85.00 73.28 0.35 100.0 C19orf48P-218 lncRNA vagina (Tissue)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 2570.00 68.81 10.63 91.75 SNHG18-220 lncRNA vagina (Tissue)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 27.00 3.02 0.11 100.0 ENST00000817026 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 1.00 0.03 0.00 100.0 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 139.24 4.70 0.58 49.03 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 99.86 3.37 0.41 61.26 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 264.72 8.93 1.09 63.03 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 116.04 3.92 0.48 31.88 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 54.00 1.82 0.22 90.0 ENST00000823279 lncRNA vagina (Tissue)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 413.92 13.96 1.71 39.88 ENST00000823279 lncRNA vagina (Tissue)