ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 723.00 57.20 2.99 100.0 SNORD98-201 snoRNA vagina (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 265.00 20.97 1.10 100.0 SNORD98-201 snoRNA vagina (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 76324.98 77.15 315.63 79.22 MIR106AHG-201 lncRNA vagina (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 17.31 0.02 0.07 52.45 MIR106AHG-201 lncRNA vagina (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.00 0.01 100.0 MIR106AHG-201 lncRNA vagina (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 11.93 0.01 0.05 36.15 MIR106AHG-201 lncRNA vagina (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 278.00 30.15 1.15 100.0 MEG8-222 lncRNA vagina (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 405.00 43.93 1.67 100.0 MEG8-222 lncRNA vagina (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 79.00 2.04 0.33 100.0 SNHG14-224 lncRNA vagina (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 723.00 18.63 2.99 76.43 SNHG14-224 lncRNA vagina (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 464.00 11.96 1.92 63.47 SNHG14-224 lncRNA vagina (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 923.38 5.36 3.82 45.87 5S_rRNA.20-201 rRNA pseudogene vagina (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 141.00 5.98 0.58 100.0 HSPA9-211 retained intron vagina (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 900.00 38.17 3.72 59.76 HSPA9-211 retained intron vagina (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 3321.00 62.21 13.73 100.0 DNM3OS-205 lncRNA vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 3894.00 0.24 16.10 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 173.00 0.01 0.72 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 3.00 0.00 0.01 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 951.00 0.06 3.93 86.3 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 31.00 0.00 0.13 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 643.00 0.04 2.66 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 587.00 0.04 2.43 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 748190.00 46.40 3094.03 99.79 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 399.00 0.02 1.65 100.0 GAS5-230 retained intron vagina (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2087.00 0.13 8.63 100.0 GAS5-230 retained intron vagina (Tissue)