ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 227.00 57.76 0.94 100.0 SNHG21-206 retained intron vagina (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 169278.00 48.99 700.02 98.47 MIR486-1-201 miRNA vagina (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 39725.00 79.06 164.28 99.97 NOP56-219 retained intron vagina (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 273.00 0.54 1.13 100.0 NOP56-219 retained intron vagina (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 982.00 1.95 4.06 100.0 NOP56-219 retained intron vagina (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3663.00 7.29 15.15 51.78 NOP56-219 retained intron vagina (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3976.28 28.62 16.44 38.0 RNA5-8SN2-201 rRNA vagina (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 7.00 0.05 0.03 100.0 RNA5-8SN2-201 rRNA vagina (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 529.00 3.81 2.19 100.0 RNA5-8SN2-201 rRNA vagina (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 7.00 0.05 0.03 100.0 RNA5-8SN2-201 rRNA vagina (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 6187.65 44.53 25.59 59.14 RNA5-8SN2-201 rRNA vagina (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 3.00 100.00 0.01 100.0 MIR7974-201 miRNA vagina (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 134.00 2.07 0.55 100.0 U2.3-201 snRNA vagina (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 33.00 0.51 0.14 62.26 U2.3-201 snRNA vagina (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 8.00 0.12 0.03 100.0 U2.3-201 snRNA vagina (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 840.00 12.97 3.47 100.0 U2.3-201 snRNA vagina (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 251.00 3.88 1.04 100.0 U2.3-201 snRNA vagina (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 240.00 4.40 0.99 100.0 U2.6-201 snRNA vagina (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 16.00 0.09 0.07 8.51 ENST00000619323 lncRNA vagina (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 17563.00 95.16 72.63 97.24 ENST00000619323 lncRNA vagina (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 148.00 21.99 0.61 100.0 SCARNA4-202 scaRNA vagina (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 442.00 79.64 1.83 100.0 ENST00000625572 miRNA vagina (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1406.00 89.04 5.81 100.0 ENST00000630615 snoRNA vagina (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 50.00 43.48 0.21 100.0 DMRT2-209 protein coding vagina (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 3.00 2.61 0.01 100.0 DMRT2-209 protein coding vagina (Tissue)