ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 224.00 0.12 0.93 15.95 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 309.00 0.16 1.28 100.0 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1927.00 1.00 7.97 52.95 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 3345.00 1.74 13.83 66.15 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 414.00 0.22 1.71 43.58 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1371.00 0.71 5.67 63.92 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3316.00 1.72 13.71 84.74 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 25368.00 13.19 104.91 82.42 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 96048.00 49.93 397.19 90.03 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2291.00 1.19 9.47 35.46 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 19925.00 10.36 82.40 67.31 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 752.00 0.39 3.11 100.0 EIF4A2-219 retained intron vagina (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 4.00 3.81 0.02 100.0 RPS8-207 protein coding CDS not defined vagina (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 163.00 24.08 0.67 100.0 RPL7A-206 protein coding CDS not defined vagina (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 72.00 10.64 0.30 100.0 RPL7A-206 protein coding CDS not defined vagina (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 142.00 20.97 0.59 100.0 RPL7A-206 protein coding CDS not defined vagina (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2.00 0.00 0.01 100.0 RPL21-209 retained intron vagina (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4143.00 1.81 17.13 100.0 RPL21-209 retained intron vagina (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 447.00 0.19 1.85 100.0 RPL21-209 retained intron vagina (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 17558.00 7.65 72.61 96.63 RPL21-209 retained intron vagina (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 204632.00 89.19 846.22 94.91 RPL21-209 retained intron vagina (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 69.00 24.82 0.29 100.0 GABRE-209 retained intron vagina (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 130.00 3.91 0.54 100.0 RPL13A-212 retained intron vagina (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 455.00 13.68 1.88 100.0 RPL13A-212 retained intron vagina (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 226.00 6.79 0.93 100.0 RPL13A-212 retained intron vagina (Tissue)