ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 1.00 0.01 0.01 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 48.00 0.56 0.50 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 19.00 0.22 0.20 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 110.00 1.29 1.14 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 10.00 0.12 0.10 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 71.00 0.84 0.74 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 2.00 0.00 0.02 66.67 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 3.00 0.01 0.03 60.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 12407.00 30.75 128.55 95.41 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 391.00 12.73 4.05 35.07 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 83.00 86.46 0.86 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 21.00 10.61 0.22 100.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 360.00 8.81 3.73 38.46 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 576.00 14.09 5.97 61.54 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 1215.00 29.73 12.59 69.07 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 64.09 17.00 0.66 70.43 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 22.00 5.84 0.23 78.57 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 42.32 11.23 0.44 44.09 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 819.00 77.12 8.49 88.73 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 2.00 1.19 0.02 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 331.00 16.19 3.43 69.54 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 378.00 6.34 3.92 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 379.00 0.78 3.93 59.59 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 18.00 11.04 0.19 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA OCI-LY7 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 181.00 20.57 1.88 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA OCI-LY7 (Cell line)