ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 185.00 6.78 0.22 47.31 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 4120.00 26.99 4.84 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 165.00 1.08 0.19 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 259.00 22.94 0.30 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 960.00 55.94 1.13 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 49.00 6.74 0.06 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 1301.00 0.66 1.53 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 26.00 0.01 0.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 790.00 0.40 0.93 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 4548.00 2.30 5.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 682.00 0.34 0.80 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 895.00 0.45 1.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 174843.00 16.16 205.27 97.21 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 124.00 0.01 0.15 65.96 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 49.00 0.00 0.06 68.06 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 12049.00 29.54 14.15 72.9 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 651.00 90.79 0.76 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 259.00 4.06 0.30 95.22 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 569.00 91.19 0.67 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 4681.00 4.27 5.50 78.82 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 1258.00 1.15 1.48 21.18 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 72830.00 66.48 85.50 86.26 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 1427.00 8.52 1.68 28.31 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 3716.00 22.20 4.36 73.99 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 4309.46 25.74 5.06 86.45 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)