ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 794.00 9.06 0.93 68.8 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 17267.00 62.89 20.27 95.41 ENST00000788343 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 12168.30 28.06 14.29 47.55 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 6488.51 14.96 7.62 25.36 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 11097.00 25.59 13.03 98.19 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 547592.00 84.46 642.87 96.59 MIR181A1HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 4793.00 0.74 5.63 100.0 MIR181A1HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 273.00 12.22 0.32 100.0 C19orf48P-218 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 1139.00 50.98 1.34 100.0 C19orf48P-218 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 138539.00 89.09 162.64 94.84 SNHG18-220 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 240.00 16.72 0.28 100.0 ENST00000817026 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 3294.63 6.99 3.87 47.24 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 115.00 0.24 0.14 100.0 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 952.72 2.02 1.12 46.63 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 839.00 1.78 0.98 100.0 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 5499.00 11.66 6.46 99.93 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 1793.67 3.80 2.11 32.55 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 4386.63 9.30 5.15 50.82 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 470.00 1.00 0.55 87.36 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 1955.05 4.15 2.30 15.27 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 10958.05 23.24 12.86 83.45 ENST00000823801 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 37.00 94.87 0.04 97.37 ENST00000827714 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 1.00 2.56 0.00 2.63 ENST00000827714 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 8657.00 5.80 10.16 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 122.00 0.08 0.14 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)