ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 42.00 20.90 0.05 91.3 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 5.00 2.49 0.01 71.43 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 503.00 18.29 0.59 100.0 RPSA-216 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 38.00 58.46 0.04 100.0 MIR99AHG-370 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 18.00 27.69 0.02 100.0 MIR99AHG-370 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1652.00 94.45 1.94 100.0 HPS4-237 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 13.00 14.29 0.02 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 2.00 2.20 0.00 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 19.00 20.88 0.02 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 591.00 12.44 0.69 100.0 DNAJC5-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 315.00 6.54 0.37 100.0 ENST00000707189 TEC smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 170.00 0.20 0.20 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 21570.69 25.92 25.32 29.1 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 19.00 0.02 0.02 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 61.00 0.07 0.07 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 55735.97 66.97 65.43 69.67 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 407.00 0.49 0.48 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 39.00 0.05 0.05 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 165.00 0.20 0.19 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 402.00 0.48 0.47 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 8710.00 0.59 10.23 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1380.00 0.09 1.62 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 298.00 0.02 0.35 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 11964.00 0.81 14.05 65.39 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 1445771.00 97.73 1697.34 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)