ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 705.00 0.50 0.83 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 135144.00 96.61 158.66 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 9077.00 62.29 10.66 71.44 SNORD70-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 5445.00 69.05 6.39 84.58 B4GALNT2-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 298.00 3.78 0.35 100.0 B4GALNT2-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 792.00 86.75 0.93 100.0 NDE1-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 52.00 66.67 0.06 100.0 MIR450B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 317.00 55.32 0.37 100.0 MIR887-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 73.00 92.41 0.09 100.0 MIR889-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 7173.00 80.89 8.42 100.0 SNORD111-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 3040.00 71.65 3.57 87.91 SNORD88A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 39.00 97.50 0.05 100.0 MIR548K-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 915.00 73.97 1.07 100.0 MIR320B2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 61.00 95.31 0.07 100.0 MIR1271-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 428.00 0.22 0.50 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 188197.00 97.18 220.94 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1208.00 0.62 1.42 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 413.00 0.21 0.48 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 795.00 19.20 0.93 100.0 SNORD111B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 452.00 7.71 0.53 100.0 RNU2-36P-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 487.00 8.31 0.57 100.0 RNU2-36P-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 535.00 0.22 0.63 100.0 SNORD19C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 231799.00 96.86 272.13 98.32 SNORD19C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1744.00 0.33 2.05 100.0 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 494160.00 94.23 580.14 98.91 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)